Started keeping this code change diary now the initial script, adxFromSheet.py
is at a reasonable stage.

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2006-03-06-08
adxFromSheet UPDATE TO NEW SCHEMA - InstrumentRun

- class adxInstrumentRun added

- fun translateFile
  - read in otherLines
  - build runs
  - write out runs
  
- fun buildSpecimenDefs
  - renamed buildSpecsRunsAssays  
  - create runs
  
- class adxSpecimen
  - buildReceiptEventElement renamed buildTransferEventElement
  - buildSpecimenElement create a transferEvent instead of receiptEvent 
  
- class adxMeasurement
  - added property instrumentRun
  - __init__ added param instrumentRun
  - buildMeasurementElement   
    - write 'of' instead of 'spec' element
    
GLOBAL CHANGE xlink: to xl:


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2006-03-06-08
adxFromSheet FIX BUG - Creating InstrumentRun every proc, not reusing

added globals
- instrumentRunsByID
- deviceSetupsByID
- gGMLUniqueIDs

- class gmlIDBuilder
  - __init__ use gGMLUniqueIDs to guarantee all ID's unique

- class adxProcedure
  - instrumentRunForRow added

- fun buildSpecsRunsAssays
  - use instrumentRunForRow
  
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2006-03-13-16
REWRITE FOR OPTIMAL HISTORY MODEL

adxFromSheet.py
- instrumentRunsByID removed

- class adxProcedure
  - instrumentRunForRow removed

- class adxProcessingHistory
- class adxProtoHistory
- class adxProtoPulpPrep
- class adxProtoRejectStore
- class adxProtoInstrumentPrep
- class adxProtoSampleReceipt
- class adxProtoPulpReuse
- class adxProtoMeasure
  - added
   
- class adxMeasurement
  - removed property instrumentRun
  - __init__ removed param instrumentRun
  - buildMeasurementElement   
    - don't write 'via' element

- class adxInstrumentRun
  - removed    

- class adxPrepSeq
  - removed
      
- fun buildSpecsRunsAssays
  - removed

- fun buildIncomingSampleProcessingHistories
  - added

- fun buildSeqDefs
  - moved some logic to   
  
- fun TextSubElement
  - added  
  
- fun translateFile
  - don't build or output runs    

- class gmlIDBuilder
  - moved gID & gGMLUniqueIDs in from being globals to being class vars

  
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2006-03-16
GENERATE ESSENTIAL PARAMS FOR OPTIMAL HISTORY MODEL

adxFromSheet.py
  class adxProtoPulpPrep
  class adxProtoRejectStore
  class adxProtoInstrumentPrep
  class adxProtoSampleReceipt
  class adxProtoPulpReuse
  class adxProtoRepeat
  class adxProtoMeasure
  - __init__ added fills param
  - buildParamElement write fills element

  fun buildIncomingSampleProcessingHistories
  - add an adxProtoSamplReceipt param to each history
  
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2006-03-17
ENABLE PULP REUSE TO HAVE PROCEDURE

adxFromSheet.py
    class adxProtoPulpReuse
    - __init__ added param & store member procUsed (so originalSampleID not 1st param)
    - buildParams writes procUsed as well
    
    fun buildIncomingSampleProcessingHistories
    - lookup type for initial event, do NOT assume SampleReceiptEvent